US 12,466,894 B2
Anti-MUC16 antibodies and uses thereof
David Spriggs, New York, NY (US); Alberto Fernandez-Tejada, Logrono (ES); and Dharmarao Thapi, Bayside Hills, NY (US)
Assigned to Memorial Sloan Kettering Cancer Center, New York, NY (US)
Filed by MEMORIAL SLOAN KETTERING CANCER CENTER, New York, NY (US)
Filed on Jul. 14, 2021, as Appl. No. 17/375,048.
Application 17/375,048 is a division of application No. 15/558,694, granted, now 11,066,480, previously published as PCT/US2016/022643, filed on Mar. 16, 2016.
Claims priority of provisional application 62/134,402, filed on Mar. 17, 2015.
Prior Publication US 2023/0026100 A1, Jan. 26, 2023
This patent is subject to a terminal disclaimer.
Int. Cl. A61K 39/395 (2006.01); A01K 67/0275 (2024.01); A61K 39/00 (2006.01); A61P 35/00 (2006.01); C07K 14/47 (2006.01); C07K 16/28 (2006.01); C07K 16/30 (2006.01)
CPC C07K 16/3092 (2013.01) [A01K 67/0275 (2013.01); A61K 39/0011 (2013.01); A61K 39/00117 (2018.08); A61P 35/00 (2018.01); C07K 14/4727 (2013.01); C07K 16/2809 (2013.01); A01K 2217/052 (2013.01); A01K 2217/15 (2013.01); A01K 2217/203 (2013.01); A01K 2227/105 (2013.01); A01K 2267/0331 (2013.01); C07K 2317/24 (2013.01); C07K 2317/31 (2013.01); C07K 2317/33 (2013.01); C07K 2317/34 (2013.01); C07K 2317/56 (2013.01); C07K 2317/565 (2013.01); C07K 2317/622 (2013.01); C07K 2317/73 (2013.01); C07K 2317/76 (2013.01); C07K 2317/77 (2013.01); C07K 2317/92 (2013.01); C12N 2800/30 (2013.01)] 15 Claims
 
1. An anti-MUC16 antibody conjugate comprising an anti-MUC16 antibody or antigen binding fragment conjugated to a payload, wherein the anti-MUC16 antibody or antigen binding fragment comprises:
(a) (i) a VH comprising a VH CDR1 comprising the amino acid sequence TX1GMGVG (SEQ ID NO:103), wherein X1 is L or V; a VH CDR2 comprising the amino acid sequence HIWWDDX2DKYYX3PALKS (SEQ ID NO:104), wherein X2 is E or absent, and X3 is Y or N; and a VH CDR3 comprising the amino acid sequence IGTAQATDALDY (SEQ ID NO: 105); and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence RSSKSLX4X5SNGNTYLY (SEQ ID NO:106), wherein X4 is R or L, and X5 is K or H; a VL CDR2 comprising the amino acid sequence YMSNLAS (SEQ ID NO:107); and a VL CDR3 comprising the amino acid sequence MQX6LEX7-PLT (SEQ ID NO:108), wherein X6 is G or S, and X7 is H or Y; or
(b) (i) a VH comprising a VH CDR1 comprising the amino acid sequence GFSLX8TX9GM (SEQ ID NO:109), wherein X8 is N or S, and wherein X9 is L or V; a VH CDR2 comprising the amino acid sequence WDDX10 (SEQ ID NO:110), wherein X10 is E or absent; and a VH CDR3 comprising the amino acid sequence GTAQATDALD (SEQ ID NO:111); and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence SKSLX11X12SNGNTY (SEQ ID NO:112), wherein X11 is L or R, and X12 is H or K; a VL CDR2 comprising the amino acid sequence YMS (SEQ ID NO:113); and a VL CDR3 comprising the amino acid sequence X13LEX14PL (SEQ ID NO:114), wherein X13 is G or S, and X14 is H or Y; or
(c) (i) a VH CDR1 comprising the amino acid sequence GFSLX15TX16GMG (SEQ ID NO:115), wherein X15 is N or S, and X16 is V or L; a VH CDR2 comprising the amino acid sequence IWWDDX17DK (SEQ ID NO:116), wherein X17 is E or absent; and a VH CDR3 comprising the amino acid sequence X18RIGTAQATDALDY (SEQ ID NO:117), wherein X18 is T, A, or S; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence KSLX19X20SNGNTY (SEQ ID NO:118), wherein X19 is V or L, and X20 is H or K; a VL CDR2 comprising the amino acid sequence YMS (SEQ ID NO:119); and a VL CDR3 comprising the amino acid sequence MQSLEYPLT (SEQ ID NO:120); or
(d) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:83, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:84, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:85; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:86, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:87, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 88; or
(e) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:89, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:90, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:91; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:92, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:93, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 94; or
(f) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:95, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:96, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:97 and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:98, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:99, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 100; or
(g) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:23, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:24, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:25; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:26, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:27, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 28; or
(h) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:29, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:30, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:31; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:32, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:33, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 34; or
(i) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:35, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:36, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:37; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:38, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:39, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 40; or
(j) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:43, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:44, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:45; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:46, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:47, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 48; or
(k) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:49, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:50, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:51; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:52, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:53, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 54; or
(l) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:55, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:56, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:57; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:58, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:59, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 60; or
(m) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:3, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:4, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:5; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:6, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:7, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 8; or
(n) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:9, a VH CDR2 comprising the amino acid sequence of SEQ ID NO: 10, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:11; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:12, a VL CDR2 comprising the amino acid sequence of SEQ ID NO: 13, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 14; or
(o) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:15, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:16, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:17; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:18, a VL CDR2 comprising the amino acid sequence of SEQ ID NO: 19, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 20; or
(p) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:63, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:64, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:65; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:66, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:67, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 68; or
(q) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:69, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:70, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:71; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:72, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:73, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 74; or
(r) (i) a VH comprising a VH CDR1 comprising the amino acid sequence of SEQ ID NO:75, a VH CDR2 comprising the amino acid sequence of SEQ ID NO:76, and a VH CDR3 comprising the amino acid sequence of SEQ ID NO:77; and (ii) a VL comprising a VL CDR1 comprising the amino acid sequence of SEQ ID NO:78, a VL CDR2 comprising the amino acid sequence of SEQ ID NO:79, and a VL CDR3 comprising the amino acid sequence of SEQ ID NO: 80.