CPC C07H 19/24 (2013.01) [C09K 11/06 (2013.01); C12Q 1/682 (2013.01); C12Q 1/686 (2013.01); G01N 21/77 (2013.01); C09K 2211/1018 (2013.01); G01N 2021/7786 (2013.01)] | 20 Claims |
1. A compound of Formula I:
![]() wherein
R is OR1, or NR2R3, wherein R is at the ortho, meta, meta', or para position relative to the NH substituent of Formula I;
X is O, C═O, NR4, S, S═O, or S(═O)2;
Gx is a moiety of Formula X1 or X2;
![]() Y is H, OH, halo, or Me;
Z is OH, O(dimethoxytrityl), guanidinium, phosphate, diphosphate, triphosphate, phosphoramidite, phosphorothioate, or —O2P(═O)(3′ -X1A) wherein Formula X1A is,
![]() Rz is H, —P(N(R4)2)(OCH2CH2CN), or —O2P(═O)(5′-X1A);
R1 is CH2CH3 or (C3-C12)alkyl wherein alkyl is optionally branched;
R2 and R3 are each independently CH3, CH2CH3, or (C3-C12)alkyl wherein alkyl is optionally branched;
R4 is H, CH3, or CH2CH3, CH(CH3)2;
each Q is independently H, CH3, CH2CH3, (C3-C12)alkyl wherein alkyl is optionally branched, or —(CH2CH2O)n(C1-C4)alkyl where n is 1-20, and when Q is not H the carbon of the CH—Q bond is a stereocenter having an (R)-configuration, or an (5)-configuration;
RA is H, CH3, CH2CH3, (C3-C12)alkyl wherein alkyl is optionally branched, or an amide bond to X2A wherein Formula X2A is:
![]() RB is H, CH3, CH2CH3, (C3-C12)alkyl wherein alkyl is optionally branched, or a protecting group;
RC is OH, OCH3, OCH2CH3, O(C3-C12)alkyl wherein alkyl is optionally branched, or an amide bond to X2A;
each J is independently O or S, and when J is S the phosphorous stereocenter has an (R)-configuration, or an (S)-configuration;
each W is independently adenine (A), thymine (T), cytosine (C), guanine (G), or Formula IA, wherein Formula IA is,
![]() and
d is 1 to about 50.
|