| CPC G01J 3/2823 (2013.01) [G01J 3/462 (2013.01); G01J 2003/066 (2013.01); G01J 2003/2826 (2013.01)] | 10 Claims |

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1. A method of analyzing a spectral image of a sample having cells stained by a stain, the method comprising:
identifying in the spectral image a plurality of nuclei, and extracting, for each nucleus, a spectrum characterizing an optical transmission and absorbance of the nucleus within a wavelength range corresponding to the stain, thereby providing a plurality of spectra, one spectrum for each nucleus of at least a portion of the nuclei;
calculating mean square error relative to a reference spectrum and/or vectorial properties of the spectra in each dimension of a multi-dimensional vector representing the spectra in a multi-dimensional space;
comparing shapes of the spectra thereamongst based on said mean square error and/or said vectorial properties;
identifying each nucleus of the portion of the nuclei, as belonging to one of at least a first population of nuclei and a second population of nuclei based on the comparing; and
marking the nucleus according to the identification.
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