1. A dimer comprising first and second fusion molecules, the first fusion molecule comprising a DNA binding domain that binds to a first target site and a first wild-type or engineered cleavage domain and the second fusion molecule comprising a DNA-binding domain that binds to a second target site and a second wild-type or engineered cleavage domain, wherein the first and second cleavage domains dimerize when the DNA-binding domains are bound to the first and second target sites separated by 7 base pairs, wherein the first fusion molecule comprises an amino acid linker between the DNA-binding domain and the first cleavage domain, wherein the linker is selected from the group consisting of:
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(SEQ ID NO: 114) |
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SGERRQSHVL; |
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(SEQ ID NO: 100) |
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SGAIRCHDEFWF; |
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(SEQ ID NO: 91) |
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SGALQEPWSI; |
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(SEQ ID NO: 138) |
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SGFNHSSCDVVY; |
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(SEQ ID NO: 147) |
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QSGKIASPHVVI; |
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(SEQ ID NO: 154) |
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SGTPHEVGVYTL; |
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(SEQ ID NO: 254) |
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MGDEHRKLRLMSQMRLQVD; |
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(SEQ ID NO: 255) |
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KPRTDRKIFSLRLAN; |
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(SEQ ID NO: 266) |
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NPLPRNKYPSPYFLH; |
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(SEQ ID NO: 267) |
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APPAASKSRTWEMRR; |
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(SEQ ID NO: 268) |
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LNRPKLNTRPHYTSV; |
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and |
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(SEQ ID NO: 269) |
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QTRPPRSFCMLAMTG. |
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