| CPC G01N 33/54366 (2013.01) [B01F 23/50 (2022.01); G02B 13/22 (2013.01); G02B 15/00 (2013.01); G02B 21/0088 (2013.01); G02B 21/16 (2013.01); G02B 21/26 (2013.01); B01J 2219/00351 (2013.01); B01J 2219/00418 (2013.01)] | 19 Claims |

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1. An optical imaging system, comprising:
a first stage comprising a sample holding region;
a frame configured to provide mechanical coupling between the first stage and a second stage,
wherein the first stage is configured to support a substrate comprising a plurality of microfluidic channels such that, in operation, the sample holding region holding a sample is located below the substrate supported by the first stage and a solution comprising fluorescently tagged probe molecules contacts the sample as the solution flows through the plurality of microfluidic channels;
one or more lenses disposed between the first stage and the second stage, the one or more lenses configured to receive light from the sample at the first stage, wherein an arrangement of the one or more lenses has a numerical aperture less than 0.1; and
a sensor array coupled to the second stage and configured to receive light passing through the one or more lenses, wherein the sensor array is configured to receive light passing through the one or more lenses to detect light fluorescing from the fluorescently tagged probe molecules.
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