US 12,187,816 B2
Macrocyclic compounds and methods of use thereof
Jakob Fuhrmann, South San Francisco, CA (US); Wayne Fairbrother, South San Francisco, CA (US); Hao Wu, South San Francisco, CA (US); and Jeremy Murray, South San Francisco, CA (US)
Assigned to Genentech, Inc., South San Francisco, CA (US)
Filed by Genentech, Inc., South San Francisco, CA (US)
Filed on Jun. 22, 2021, as Appl. No. 17/355,022.
Claims priority of provisional application 63/043,071, filed on Jun. 23, 2020.
Prior Publication US 2022/0106361 A1, Apr. 7, 2022
Int. Cl. C07K 7/64 (2006.01); A61K 31/551 (2006.01); A61K 38/00 (2006.01); A61K 47/64 (2017.01)
CPC C07K 7/64 (2013.01) [A61K 31/551 (2013.01); A61K 47/64 (2017.08); A61K 38/00 (2013.01)] 16 Claims
 
1. A macrocyclic compound, or a pharmaceutically acceptable salt thereof, wherein the macrocyclic compound is a compound of formula (I):

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wherein:
X1 is a VHL binding motif having the formula —X1A—X1B—X1C—;
X1B is an L-hydroxyproline or an L-fluorohydroxyproline;
X1A is selected from the group consisting of L-Tle, L-bMe-Ile, L-Tle-Tria, NMe-L-Tle-Tria, L-Tle-Tria-CyP, L-Val, L-Ala, L-Abu, L-Pen, L-Cha, L-Cpa, L-Cba, L-bMe2AllylGly, L-AdaGly and L-ThpGly;
X1C is selected from the group consisting of D-MTPG, D-BiPhe, D-Ala, Aib, D-Bta, L-Bta, D-bMtpg, L-bMtpg, D-MtPhe, L-BiPhe, L-Tyr(O-Me), D-bBiPhe, D-bRMeBiPhe, D-bSMeBiPhe, D-Phe(4Br), D-Phe(4Cl), D-Phe(4F), D-Phe(4CN) and D-Phe(4I);
L2C-L2B-L2A-X2-L1A-L1B-L1C is selected from the group consisting of:

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R52A and R52B are independently selected from the group consisting of hydrogen, C1-C4 alkyl, —CH2-phenyl, —CH2-biphenyl, —CH2-pyridyl, —CH2—CH2—C(O)—NH2, and —(CH2)n15—R111 wherein n15 is an integer from 1 to 4, and R111 is selected from the group consisting of —NH2, N3, and —C(O)—NH2;
R53 is selected from the group consisting of hydrogen, —C(O)NH2, —[CH2]n16—NH2—, and —[C(O)NH—CH2]n17—C(O) NH2—, wherein each of n16 and n17 are independently an integer from 1 to 3;
R54 is hydrogen or unsubstituted C1-C6 alkyl;
L10 is a bond, a peptide linker or a non-peptide linker; and
X3 comprises a target protein binding motif (TPBM).