US 11,964,025 B2
Peptide-containing linkers for antibody-drug conjugates
Aleksandr V. Yurkovetskiy, Littleton, MA (US); Natalya D. Bodyak, Boston, MA (US); Bingfan Du, Cambridge, MA (US); Dmitry R. Gumerov, Waltham, MA (US); Mariya Kozytska, Brookline, MA (US); Timothy B. Lowinger, Carlisle, MA (US); Cheri A. Stevenson, Haverhill, MA (US); and Mao Yin, Needham, MA (US)
Assigned to Mersana Therapeutics, Inc., Cambridge, MA (US)
Filed by Mersana Therapeutics, Inc., Cambridge, MA (US)
Filed on Aug. 12, 2021, as Appl. No. 17/400,387.
Application 17/400,387 is a continuation of application No. 15/819,650, filed on Nov. 21, 2017, granted, now 11,135,307.
Claims priority of provisional application 62/572,010, filed on Oct. 13, 2017.
Claims priority of provisional application 62/425,895, filed on Nov. 23, 2016.
Prior Publication US 2023/0043447 A1, Feb. 9, 2023
This patent is subject to a terminal disclaimer.
Int. Cl. A61K 47/65 (2017.01); A61K 38/07 (2006.01); A61K 47/68 (2017.01); A61P 35/00 (2006.01); A61K 47/54 (2017.01); A61K 47/60 (2017.01)
CPC A61K 47/6889 (2017.08) [A61K 38/07 (2013.01); A61K 47/65 (2017.08); A61K 47/6803 (2017.08); A61K 47/6849 (2017.08); A61K 47/6851 (2017.08); A61K 47/6855 (2017.08); A61K 47/6883 (2017.08); A61K 47/6885 (2017.08); A61P 35/00 (2018.01); A61K 47/549 (2017.08); A61K 47/60 (2017.08)] 16 Claims
 
1. A conjugate of Formula (I):

OG Complex Work Unit Chemistry
wherein
a1 is 1;
a2 is 3;
a3 is an integer from 0 to 1;
a4 is an integer from 1 to 5;
a5 is an integer from 1 to 3;
d13 is an integer from 1 to about 14;
PBRM is an antibody or antibody fragment that binds to a target antigen;
LP′ is a divalent linker moiety connecting the PBRM to MP, of which the corresponding monovalent moiety LP, when not connected to PBRM, contains a functional group WP, wherein each WP independently is:

OG Complex Work Unit Chemistry
wherein
ring A is optionally substituted C3-8 cycloalkyl or optionally substituted 5- to 12-membered heterocycloalkyl, wherein the cycloalkyl or heterocyloalkyl is monocyclic or bicyclic;
MPP is:

OG Complex Work Unit Chemistry
wherein * denotes attachment to LP′ and ** denotes attachment to LM;
R3 is —C(O)—NR5— or —NR5—C(O)—;
R4 is a bond or —NR5—(CR20R21)—C(O)—;
each R5 independently is hydrogen, C1-6 alkyl, C6-10 aryl, C3-8 cycloalkyl, —COOH, or —COO—C1-6 alkyl;
each R20 and R21 independently is hydrogen, C1-6 alkyl, C6-10 aryl, hydroxylated C6-10 aryl, polyhydroxylated C6-10 aryl, 5- to 12-membered heterocycle, C3-8 cycloalkyl, hydroxylated C3-8 cycloalkyl, polyhydroxylated C3-8 cycloalkyl or a side chain of a natural or unnatural amino acid;
each b1 independently is an integer from 0 to 6;
each f1 independently is an integer from 1 to 6;
g2 is an integer from 1 to 4;
LM is:

OG Complex Work Unit Chemistry
wherein:
custom character denotes attachment to MP;
Y1 denotes attachment to L3 or attachment to MA when L3 is absent;
R2 is hydrogen, optionally substituted C1-6 alkyl, optionally substituted C1-6 heteroalkyl, —COOH, or —COO—C1-6 alkyl;
each c6 independently is an integer from 0 to 10;
L3 is —X—C1-10 alkylene—C(O)— or —CH2—(CH2)v—C(O)—NR5—(CH2)v—C(O)—, wherein each v independently is an integer from 1 to 10, from 1 to 6, or from 2 to 4, or v is 2, with X directly connected to LM, wherein X is CH2, O, or NR5;
MAA is a peptide moiety that contains from two to ten amino acids selected from glycine, serine, glutamic acid, aspartic acid, lysine, cysteine and stereoisomers and combinations thereof;
T1 is a hydrophilic group, wherein the hydrophilic is

OG Complex Work Unit Chemistry

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 or a combination thereof, and the

OG Complex Work Unit Chemistry
 between T1 and MA denotes direct or indirect attachment of T1 and MA;
wherein n1 is an integer from 0 to about 6;
each R58 independently is hydrogen or C1-8 alkyl;
R60 is a bond, a C1-6 alkyl linker, or —CHR59—, wherein R59 is H, C1-6 alkyl, C3-8 cycloalkyl, or C6-10 arylalkyl;
R61 is —CH2OR62, —COOR62, —(CH2)n2COOR62, or C3-8 heterocycloalkyl substituted with one or more hydroxyl, wherein the C3-8 heterocycloalkyl comprises one to four heteroatom ring members independently selected from N, O, P, and S;
R62 is H or C1-8 alkyl;
n2 is an integer from 1 to about 5;
n4 is an integer from 1 to about 25;
each R63 independently is hydrogen or C1-8 alkyl;
R64 is a bond or a C1-8 alkyl linker;
R65 is H, C1-8 alkyl, or —(CH2)n2COOR62;
each occurrence of D independently is a therapeutic agent having a molecular weight≤about 5 kDa; and
each occurrence of LD independently comprises a peptide comprising an amino acid selected from alanine, β-alanine, arginine, aspartic acid, asparagine, histidine, glycine, glutamic acid, glutamine, leucine, serine, tyrosine, threonine, isoleucine, and tryptophan, connecting D to MA, and LD comprises at least one cleavable bond such that when the bond is broken, D is released.